I'm pretty sure that it's the same tranny but with a different gearset. It has the MN12 (Z06) gears. Some people like the ratios better than the MN6, some don't. Honestly, they're not that different. I've never noticed a difference in my two cars. (Then again, there are bigger differences between the two than just the transmission gearing...

) If you can get it for a decent price, I see no problem with the GTO tranny vs an F-body one. You will need a new shifter though. The stock GTO one stinks.
MN6
1st 2.66
2nd 1.78
3rd 1.30
4th 1.0
5th .74
6th .50
Rev. 2.9
MN12
1st 2.97
2nd 2.07
3rd 1.43
4th 1.0
5th .84
6th .56
Rev. 3.28