Can you hot wire the inline pump to the harness?
The best thing to do is run a 10-12 guage line from a relay (IIRC a 30amp automotive relay) thats connected to the remote + terminal by your under hood fuse boxes. Then tap the "switch wire" for the relay into the stock fuel line "turn-on" wire in the fuse box right next to the terminal. This way the in-line will come on with the stocker and you will get a solid 12 volts. This is sometimes referred to as a "hot wire kit". Sponsors can hook you up with one or you can just go to the auto store and find what you need.

