Fuel pressure regulator
First, you need to measure the fuel pressure at the rail with a mechanical gauge. For the Gen III engine, the factory calls for a steady 55-60 psi under all conditions (key ON, idle, part and full throttle). What is the flow rate of the inline pump and do you have an intake pump as well? I would guess if you're running just the inline pump, it's not supplying enough fuel. I would also check to make sure the pump has enough voltage.

