Question about not setting the LS1 to TDC
Don't get too nervous until you get at least 50 or 100 miles on the car... the PCM will need some time to re-learn and make some adjustments. A-tap the engine, make sure everything is kosher, then go back over the engine bay and check your work. I don't think you're going to find a problem related to TDC, if anything, I would dig up my receipt, because you may have gotten jipped with a bum engine.
Hope this helps.
Andy


