Help with LQ4 misfire
1) Something wasn't torqued to spec, allowing some sort of vacuum leak being pulled in Post-MAF, meaning you're getting more air than the MAF is picking up
2) Have you verified your MAF is in good working order? As you know, a bad MAF sensor or a dirty one will cause misfires.
I'm leaning towards a bad A/F ratio causing your misfires, if everything is stock, with a stock tune.
Also curious... do you know what caused your original manifold to just crack?

