Low numbers for an 427?
My 11:1 LS7 with 243/256 .650" lift cam, stock LS7 heads/intake, 1 7/8" long tubes, and M6 transmission only made 522rwhp/472rwtq on a Dynojet... but it went 110mph 1/8 and 138mph in the 1/4. (2900lbs with driver approx)
Does the Holley Sniper Low profile intake out perform a FAST LSXr LS7 style intake? Nope
Does a 240/256 .629 I/E on a 113+4 make more power than a 243/251 .660 I .633E on a 115+5? Questionable.
Does a 4L80E rob your of more power than TR6060 or T56 magnum? Yes it does
That's comparing an LSX 427/LS7 top end with a manual and S60 to your LS 427/LS3 top end with 4L80E and Ford 9"
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Ported GM casting LS3 heads, 246/262 solid roller cam (roughly 240/256 in hydraulic numbers), 4L80, 9" rear, 4.xx gearing (can't remember exactly) made ~570 to the tires, ran 10.3 on a 3800 lb car. Multiple intakes, same result. I agree with everything you listed, but I still feel the motor is way off somewhere more fundamental.
Swapped out the low profile intake for mano motorsport ported 102 intake. No retune done yet but it did pick up power across the board. The red line was my hp with old intake they didn't have a tq number for some reason.











