Transmission Troubles
Based on what you have said and that two transmissions are unlikely to have the same electrical problem, either your wire harness to the transmission has at least one wire shorted to ground or the PCM is defective.
I would check the wire harness first for any pinched or abraded areas. However my gut feeling is that your PCM is defective and will need to be replaced. I would go for a 2002 PCM which is the latest what will work with your car.
But I'm no trans expert, so wait for other opinions.
I was really hoping to have my car up and running again lol A good scanner, e.g. Hp Tuners or what your local trans shop has, can activate and test the shift solenoids. In a quiet area with engine off, you can hear the solenoids turn on and off. If this test is successful, then the PCM, wiring harness and shift solenoids are fine. Based on what you are saying, I think the test will fail and it will take more electrical checking to determine if its the wiring harness or the PCM.
I assume your trans is in limp mode (3rd gear) and you have a high stall converter; hence the RPMs rise without the car moving. It should move once you hit the stall rpm.
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Use a volt meter to check that you have +12V on both sides of the fuse and/or just replace it anyway.






