98 Auto Harness Question
Repinning the PCM connectors to the 99-04 pinouts isnt difficult, just time consuming
The 98 CTS is preferable for your swap because it incorporates the coolant gauge sender into the CTS making one less sensor to retrofit to the new engine to get all of your gauges working. All of my harnesses use the 3 wire CTS
Here is what I would do..
Re-pin the 1998 to the 1999-02 setup
Get a 1999-02 PCM
Get everything needed to make the Harness work(like mentioned, 1999-up Knock Sensor Wiring)
Swap it all in..
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Just be sure to match the knock sensors to the harness used
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