Bad pcm symptoms?
In short, in my experience PCM hardware issues are pretty rare.
If your tuners laptop died while flashing the PCM, this can cause odd issues (even a no-start condition) if the flash was corrupted. You probably need to do a complete rewrite of the PCM to recover it before attempting to swap parts.
Were the injectors or the fuel system changed?
Any way to check the fuel pressure?
Were the MAF or MAP sensors changed?
Assuming your tuner has HP Tuners or EFI Live, he/she should be able to log a WOT run which would help diagnose this problem.
However, as suggested, getting a complete Write made to the PCM should be the first step.

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I accidentally knocked the USB cable out of my laptop because it wasn't fully seated while flashing one of my 411 PCM's with HP Tuners. Car wouldn't start, fuel pump wouldn't enable at key on, etc.. I reconnected the cable and tried a write entire, it came up with a window that said "recovering..." A few moments later HP Tuners did an erase and re-flash which cured my problem.








